PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 245aa    MW: 25493.9 Da    PI: 7.5025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-40271271100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p e+r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_011093197.1  27 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHVPVEKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 121
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_011093197.1 122 SYLQAH 127
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05526128IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3927125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSSSVPSSS SGAAGGGGSS GGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLHVPVEK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LSYLQAHLAT LELPTPPPAP PPPLLPPALS ISDSATSSSA FPATYDLSSL IDPILHPSWI  180
LNQRQDIDPR SFSTTTAARA PPDIPSSAAS SGGDLQELAR ELLNRHAPPV VPCRNQASTL  240
PPHSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093197.11e-177PREDICTED: LOB domain-containing protein 18-like
SwissprotO221313e-74LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A068VAN43e-99A0A068VAN4_COFCA; Uncharacterized protein
STRINGVIT_15s0048g00830.t013e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-64LBD family protein